On the Correlation Between Composition and Site-Specific Evolutionary Rate: Implications for Phylogenetic Inference
نویسندگان
چکیده
منابع مشابه
On the correlation between composition and site-specific evolutionary rate: implications for phylogenetic inference.
Model-based phylogenetic reconstruction methods traditionally assume homogeneity of nucleotide frequencies among sequence sites and lineages. Yet, heterogeneity in base composition is a characteristic shared by most biological sequences. Compositional variation in time, reflected in the compositional biases among contemporary sequences, has already been extensively studied, and its detrimental ...
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The effect of the evolutionary rate of a gene on the accuracy of phylogeny reconstruction was examined by computer stimulation. The evolutionary rate is measured by the tree length, that is, the expected total number of nucleotide substitutions per site on the phylogeny. DNA sequence data were simulated using both fixed trees with specified branch lengths and random trees with branch lengths ge...
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ژورنال
عنوان ژورنال: Molecular Biology and Evolution
سال: 2005
ISSN: 1537-1719,0737-4038
DOI: 10.1093/molbev/msj040